Call PMOD Pipeline Processing from Command Script

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Call PMOD Pipeline Processing from Command Script

As a convenience PMOD pipeline processing can be called from an external script. This allows for instance to schedule processing at times the computer is not interactively used.

In order for this type of pipeline processing to work the following conditions must be met:

A license including the all required modules must be available.

An appropriate folder structure for the input and output files has been set up.

A pipeline definition specifying the processing steps and the input files is available.

A command script executing the PMOD pipeline processing has been been prepared

These elements are described in the following sections.

Note: Execution can be started at any time, but only instance can run at a time. Starting multiple instances can lead into unpredictable results.